Toxin-antitoxin database
WebThese data were appropriately filtered using specialized literature and our previous knowledge about toxin-antitoxin systems. Results: The database provides three modules ("Search", "Browse" and "Statistics") that enable searches, acquisition of contents and access to statistical data. Direct links to matching external databases are also available. WebThe Toxin and Toxin-Target Database (T3DB), also known as the Toxic Exposome Database, is a freely accessible online database of common substances that are toxic to humans, …
Toxin-antitoxin database
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WebOct 9, 2024 · The Toxin-Antitoxin Database (TADB) is a compilation of all previously published computational and experimental results from which we found all toxins. Prediction of toxins important in the host ... WebDatabase VenomZone is a free web resource that provides information on venoms from six animal taxa (snakes, scorpions, spiders, cone snails, sea anemones and insects), as well as on their targets.
WebApr 4, 2024 · Toxin-antitoxin (TA) systems are ubiquitous and abundant genetic elements in bacteria and archaea. Most previous TA studies have focused on commensal and pathogenic bacteria, but have rarely focused on marine bacteria, especially those isolated from the deep sea. Here, we identified and characterized three putative TA pairs in the … WebDomain and motif analysis revealed that the target protein is a PemK/MazFlike toxin protein of the type II toxin-antitoxin system (TAS) which was consistent with BLASTp analysis. ... The Alpha Fold 2 Protein Structure Prediction Database was used to determine the three-dimensional (3D) structure of the HP using the template structure of a type ...
WebJan 2, 2024 · Antitoxins (in green) are composed of two domains: a DNA-binding domain that recognizes palindromic sequences, overlapping with the promoter sequence of their cognate toxin–antitoxin operon, and... WebT1TAdb provides data on: genomic locations of the TA loci, including full genome views and flanking genes 2D structure predictions of toxin mRNAs and antitoxin sRNAs 2D …
WebJan 1, 2014 · Abstract and Figures. Toxin-antitoxin (TA) systems are important genetic modules composed by two elements: a toxin, that is always a protein, and an antitoxin, that can be a RNA or a protein and ...
WebSep 1, 2024 · BtoxDB: a comprehensive database of protein structural data on toxin–antitoxin systems Comput. Biol. Med. (2015) S.A. ElBanna et al. Genomics-guided identification of a conserved CptBA-like toxin-antitoxin system in Acinetobacter Baumannii J. Adv. Res. (2024) J.J. Williams et al. Exposing plasmids as the Achilles' heel of drug … naruto minor charactersWebJan 4, 2024 · TADB2.0 (http://bioinfo-mml.sjtu.edu.cn/TADB2/) is an updated database that provides comprehensive information about bacterial type II toxin-antitoxin (TA) loci. … naruto miscalculation a new enemy appearsWebJan 1, 2024 · Toxin–antitoxin (TA) systems, initially identified as plasmid addiction modules, are highly abundant on the chromosomes of most free-living bacteria . The TA systems … naruto mirajane fairy tail fanfictionWebOct 19, 2012 · The TA loci data derived from computationally predicted datasets and/or reports of experimentally validated TA genes have been recently organized as a web-based database called TADB (Shao et al. 2011 ). The BLASTP-identified 921 TA loci present in 126 sequenced genomes reported by Gerdes and co-workers (Pandey and Gerdes 2005) were … melitta whole bean flat burr coffee grinderWebIn S. Typhimurium, bioinformatic analysis in the genome of a virulent strain revealed 27 TA loci (four loci located in plasmids); seven of them belong to type I while the rest are type II. 95 In addition, the type II toxin-antitoxin database (TADB 2.0) has listed at least 18 type II TA loci from the genome of S. Typhimurium strain LT2. 96 The ... melitta wkup coffee shotWebNov 13, 2024 · Type II toxin-antitoxin (TA) systems are highly prevalent in bacterial genomes and have been extensively studied. These modules involve in the formation of persistence cells, the biofilm formation, and stress resistance, which might play key roles in pathogen virulence. melitta wasserfiltermelitta wasserkocher prime aqua 1 7 liter